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Blaise LI
Some useful Python libraries
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18c7047f
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18c7047f
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1 year ago
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Blaise Li
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18c7047f
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@@ -13,7 +13,7 @@ The current plan is to use this repository to list (and possibly demonstrate the
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@@ -13,7 +13,7 @@ The current plan is to use this repository to list (and possibly demonstrate the
### cytoolz
### cytoolz
Lots of useful functions for function
n
al programming fun, hopefully faster than pytoolz.
Lots of useful functions for functional programming fun, hopefully faster than pytoolz.
The documentation is that of pytoolz:
<https://toolz.readthedocs.io/en/latest/>
The documentation is that of pytoolz:
<https://toolz.readthedocs.io/en/latest/>
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@@ -130,7 +130,7 @@ URL: <https://brentp.github.io/cyvcf2/index.html>
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@@ -130,7 +130,7 @@ URL: <https://brentp.github.io/cyvcf2/index.html>
### mappy
### mappy
I use its fast fata / fastq parser:
I use its fast fa
s
ta / fastq parser:
```
{python}
```
{python}
from mappy import fastx_read
from mappy import fastx_read
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@@ -162,7 +162,7 @@ URL: <https://www.biotite-python.org/>
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@@ -162,7 +162,7 @@ URL: <https://www.biotite-python.org/>
### parasail
### parasail
To perform pairwise sequence align
e
mnt.
To perform pairwise sequence alignm
e
nt.
URL:
<https://github.com/jeffdaily/parasail-python>
URL:
<https://github.com/jeffdaily/parasail-python>
...
@@ -194,4 +194,4 @@ URL: <http://scikit-bio.org/>
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@@ -194,4 +194,4 @@ URL: <http://scikit-bio.org/>
For population genetics.
For population genetics.
URL:
<https://scikit-allel.readthedocs.io/en/stable/index.html>
URL:
<https://scikit-allel.readthedocs.io/en/stable/index.html>
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