client-nuxt/components/ExperimentFileInputHelp.vue

@@ -161,11 +161,11 @@
                         <td>CC001</td>
                       </tr>
                       <tr>
-                        <td>1</td>
+                        <td>3</td>
                         <td>CC002</td>
                       </tr>
                       <tr>
-                        <td>2</td>
+                        <td>4</td>
                         <td>CC002</td>
                       </tr>
                       <tr>

client-nuxt/components/charts/SnpsAssociation.vue

@@ -24,7 +24,7 @@ export default {
         title: { text: 'SNPs association' },
         yAxis: {
           title: {
-            text: 'LOD',
+            text: '- Log(p-value)',
           },
         },
         xAxis: {

client-nuxt/pages/phenotype-categories.vue

@@ -310,7 +310,12 @@ export default {
         )
         this.$fetch()
       } catch (err) {
-        this.error = err.message
+        console.dir(err)
+        if (err?.response?.data && err.response.data.length > 0) {
+          this.error = err.response.data[0]
+        } else {
+          this.error = err.message
+        }
       } finally {
         this.closeDelete()
       }

client-nuxt/pages/projects/_id/analysis/_analysisId/results/peaks/index.vue

@@ -2,6 +2,7 @@
   <v-card flat color="transparent" class="mt-3">
     <v-card>
       <error-alert v-if="error" :error-message="error"></error-alert>
+
       <Peaks
         v-if="sanitizedPeaks.length > 0"
         :title="titleList"
@@ -11,11 +12,19 @@
         :headers="headers"
         :selected-item="selectedItem"
       />
+      <v-card-actions
+        ><download-csv :data="exportPeak" :name="exportFileName">
+          <v-btn class="mx-2" color="secondary" small fab>
+            <v-icon>mdi-table-arrow-down</v-icon>
+          </v-btn>
+        </download-csv></v-card-actions
+      >
     </v-card>
     <nuxt-child />
   </v-card>
 </template>
 <script>
+import JsonCSV from 'vue-json-csv'
 import ErrorAlert from '@/components/ErrorAlert'
 import Peaks from '~/components/DataTableActions.vue'
 
@@ -23,6 +32,7 @@ export default {
   components: {
     Peaks,
     ErrorAlert,
+    downloadCsv: JsonCSV,
   },
 
   async asyncData({ $axios, params, $auth, route }) {
@@ -56,11 +66,11 @@ export default {
       titleList: 'Significant peaks',
       headers: [
         { text: 'Id', align: 'start', value: 'id' },
-        // {
-        //   text: 'Variable Name',
+        {
+          text: 'Variable Name',
 
-        //   value: 'name',
-        // },
+          value: 'name',
+        },
         { text: 'Chromosome', value: 'chromosome' },
         { text: 'Position', value: 'position' },
         { text: 'Lod Score', value: 'lod' },
@@ -78,9 +88,25 @@ export default {
         itemRoute: this.getItemRoute(peak),
       }))
     },
+    exportPeak() {
+      return this.peaks.map(
+        // eslint-disable-next-line camelcase
+        ({ ci_hi, ci_lo, lod, p_value, position, variable_name }) => ({
+          ci_hi,
+          ci_lo,
+          lod,
+          p_value,
+          position,
+          variable_name,
+        })
+      )
+    },
     selectedItem() {
       return parseInt(this.$route.params?.peakId)
     },
+    exportFileName() {
+      return `${this.projectId}-${this.analysisId}-significant-peaks.csv`
+    },
   },
   methods: {
     getItemRoute({ id: peakId }) {

client-nuxt/pages/projects/_id/experiments/_experimentId.vue

@@ -173,7 +173,7 @@
                   </v-card-text>
                   <v-toolbar flat>
                     <v-toolbar-title
-                      >pig dingy for a generic reminder
+                      >generic reminder : pig shape transformation
                     </v-toolbar-title></v-toolbar
                   >
 

server/api/views.py

@@ -9,6 +9,7 @@ from django.http.request import QueryDict
 from django.shortcuts import get_object_or_404
 from django.http import JsonResponse
 from django.db import transaction, DataError
+from django.db.models import ProtectedError
 from django.db.utils import IntegrityError
 
 
@@ -541,6 +542,15 @@ class PhenotypeCategoryViewSet(viewsets.ModelViewSet):
     serializer_class = PhenotypeCategorySerializer
     permission_classes = [CustomPermissions]
 
+    def perform_destroy(self, instance):
+        try:
+            instance.delete()
+        except ProtectedError as e:
+            print(e)
+            raise serializers.ValidationError(
+                f"The phenotype category {instance.name} is apply on phenotypes. You cannot delete it !!"
+            )
+
     @action(detail=False)
     def permissions(self, request, pk=None):
         current_user = request.user