Parallel time windows
Update the ML workflow to parallelize time window analyzes: Example of command:
nextflow run main.nf --mode ml --results results --nb_max 5000 \
--sample_min_date 2021-09-01 --sample_max_date 2022-09-01 \
--window_step 1 --window_size 4 \
--country France \
--fasta sequences.tar.xz \
--metadata metadata.tar.xz \
--fasta_ref ref_sequences.fasta \
--metadata_ref ref_metadata.tsv \
--dates_ref ref_dates.tsv