modification of the whole code to add different viruses. Right now, working on... (!2) · Merge requests · CNRVIR / Projects / SEQ4EPI_Starphylo

Jérôme BOURRET requested to merge dev into main Dec 16, 2024

Knew version of the workflow working for RSV, Influenza (seasonal) and SARS-CoV-2.

The whole code has changed since it must work differently for each virus / input (GISAID files are different from one virus to another).

Main.nf -> workflow (virus) -> subworkflow (analysis).

modification of the whole code to add different viruses. Right now, working on...