Skip to content
Snippets Groups Projects
Commit 0420d915 authored by Remi  PLANEL's avatar Remi PLANEL
Browse files

Add test to be sure correct guide

parent 7a02f643
No related branches found
No related tags found
No related merge requests found
......@@ -30,4 +30,24 @@ def test_on_target_predict_size_guide():
(pam_val, start_val) = pam
assert (
start_val - pam_val == 3
), "the difference between start and pam position is different than 2"
), "the difference between start and pam position is different than 3"
def test_smaller_target_seq():
size_guide = 20
seq = "TTTTTTTTTTTTTTTTCCAGAAAAGAAAAAAAAAAAAAC"
predicted_targets = crisprbact.on_target_predict(seq)
list_predicted_targets = list(predicted_targets)
assert len(list_predicted_targets) == 1, "Should have only 1 result"
for predicted_target in list_predicted_targets:
guide = predicted_target["guide"]
assert guide == "GTTTTTTTTTTTTTCTTTTC", "matching guide"
assert (
predicted_target["target"] == "CTTTTCTGGAAAAAAAAAAAAAAAA"
), "the predicted target"
assert predicted_target["start"] == 19, "position start"
assert predicted_target["stop"] == 39, "position stop"
assert predicted_target["pam"] == 16, "PAM pos"
assert len(guide) == size_guide, (
"the guide do not have a length of " + size_guide
)
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment