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David BIKARD
CRISPRbact
Commits
7c80d3c9
Commit
7c80d3c9
authored
5 years ago
by
Remi PLANEL
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Rename off_target_max_matching_seq to off_target_longest_perfect_match
parent
5d74c21d
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Pipeline
#26160
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in 55 seconds
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1 changed file
crisprbact/predict.py
+1
-2
1 addition, 2 deletions
crisprbact/predict.py
with
1 addition
and
2 deletions
crisprbact/predict.py
+
1
−
2
View file @
7c80d3c9
...
@@ -74,7 +74,6 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
...
@@ -74,7 +74,6 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
)
)
X
=
X
.
reshape
(
X
.
shape
[
0
],
-
1
)
X
=
X
.
reshape
(
X
.
shape
[
0
],
-
1
)
preds
=
predict
(
X
)
preds
=
predict
(
X
)
for
i
,
target
in
enumerate
(
alltargets
):
for
i
,
target
in
enumerate
(
alltargets
):
target_id
=
i
+
1
target_id
=
i
+
1
target
.
update
({
"
target_id
"
:
target_id
})
target
.
update
({
"
target_id
"
:
target_id
})
...
@@ -114,7 +113,7 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
...
@@ -114,7 +113,7 @@ def on_target_predict(seq, genome=None, seed_sizes=[8, 9, 10, 11, 12]):
"
off_target_pampos
"
:
off_t
[
2
],
"
off_target_pampos
"
:
off_t
[
2
],
"
off_target_strand
"
:
off_t
[
3
],
"
off_target_strand
"
:
off_t
[
3
],
"
off_target_recid
"
:
off_t
[
4
],
"
off_target_recid
"
:
off_t
[
4
],
"
off_target_
max_matching_seq
"
:
off_t
[
6
],
"
off_target_
longest_perfect_match
"
:
off_t
[
6
],
"
off_target_pam_seq
"
:
off_t
[
7
],
"
off_target_pam_seq
"
:
off_t
[
7
],
"
off_target_good_orientation
"
:
None
,
"
off_target_good_orientation
"
:
None
,
}
}
...
...
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