Can set seed size

crisprbact/predict.py

@@ -43,7 +43,7 @@ def find_targets(seq):
         )
 
 
-def on_target_predict(seq, genome=None):
+def on_target_predict(seq, genome=None, seed_size=7):
 
     seq = seq.upper()  # make uppercase
     seq = re.sub(r"\s", "", seq)  # removes white space
@@ -63,11 +63,13 @@ def on_target_predict(seq, genome=None):
         )
         X = X.reshape(X.shape[0], -1)
         preds = predict(X)
+
         for i, target in enumerate(alltargets):
             target.update({"pred": preds[i]})
+            target.update({"seed_size": seed_size})
             if genome:
                 off_target_df = compute_off_target_df(
-                    target["guide"], 7, records, genome_features
+                    target["guide"], seed_size, records, genome_features
                 )
                 off_target_list = []
                 features = off_target_df.loc[0:, "features"]

pyproject.toml

 [tool.poetry]
 name = "crisprbact"
-version = "0.2.0"
+version = "0.2.1"
 license = "GPL-3.0"
 description = "Tools to design and analyse CRISPRi experiments"
 authors = ["David Bikard <david.bikard@pasteur.fr>", "Remi Planel <rplanel@pasteur.fr>"]