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Data archives for running TRamWAy notebooks

The impact of genetic diversity on gene essentiality within the E. coli species

An R package that, once installed, allows one to create an R Markdown document from a template defined by the SABER group

An ICY plugin for stitching the fields presented on well plates

Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly

Pipeline to run CMS in large-scale analyses

Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.