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Individual-based model of P. vivax transmission

Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).

Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"

Pipeline to run CMS in large-scale analyses

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.