Explore projects

Collection of R scripts and pipelines for the PvSTATEM project.

Source of the shiny server that presents results obtained by large scale double mutant yeast screens (GIM): http://hub05.hosting.pasteur.fr/GIM_interactions/

coGSEA with the SetRank Method

Code repository for the paper "An algorithm to build synthetic temporal contact networks based on close-proximity interactions data"

Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).