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MetroloSPIM plugin for Icy

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Defense Finder is a tool that automatically detect known defense systems in prokaryotic genomes. The Defense Finder Wiki aims at gathering and synthesize scientific knowledge regarding defense systems.

Shiny version of coGSEA

coGSEA

Public copy of gitlab.pasteur.fr/les-larves/maggotuba#light-stable-for-tagging Courtesy of A. Blanc

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi

ROI Inclusion Analysis plugin for Icy.

The Java Native Access (JNA) library for Icy

https://github.com/java-native-access/jna

This repo contains the script, model and parameters needed to train a StarDist model on the simulated dataset used in the ISBI Grand Challenge on Single-Particle Tracking.