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creating figures showing overall similarity between genomes

pipeline nextflow

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

Walkthrough from a conda command line installation to a container (docker or singularity) for maestro, Inception gpulab, reproduceable, sharing among colleagues.

Work in progress.

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp