Explore projects
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IAH public / CellContactAnalyzer
GNU General Public License v3.0 onlyA Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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Bioimage Analysis / Matlab X Server
GNU General Public License v3.0 onlyUse Icy as an image viewer from Matlab
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Bioimage Analysis / Linear Programming
GNU General Public License v3.0 onlyA open-source utility library for linear programming in Java with the simplex algorithm.
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Bioimage Analysis / Filter Toolbox
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Mask Editor
GNU General Public License v3.0 onlyThis plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.
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Bioimage Analysis / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
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GIPhy / Concatenate
GNU Affero General Public License v3.0Building a supermatrix of characters from a set of multiple sequence alignments
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Bioimage Analysis / Micro-Manager Blocks
GNU General Public License v3.0 onlyBlocks (Protocols) for Micro-Manager plugin
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GIPhy / C2A.A2C
GNU Affero General Public License v3.0Translating and back-translating codon and amino-acid sequence files
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Bioimage Analysis / Gson - deprecated
GNU General Public License v3.0 onlyGson library plugin for Icy
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Bioimage Analysis / Webcam Capture Example
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Track Processor Time Clip
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / ROI blocks
GNU General Public License v3.0 onlyROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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Bioimage Analysis / Intensity Profile
GNU General Public License v3.0 onlyA plugin allowing to create a graphic showing the intensity profile of 2D ROIs
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Bioimage Analysis / Google Gson
GNU General Public License v3.0 onlyGoogle Gson library for Icy : https://github.com/google/gson
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Bioimage Analysis / Java3D for Icy
GNU General Public License v3.0 onlyJava3D library for Icy
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Bioimage Analysis / Spot Detector Block
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Xuggler Video Importer
GNU General Public License v3.0 onlyUpdated