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This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

A toolbox to chain image analysis processes

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

Minimum Spanning Tree-based clustering

Surf feature matching

SDK for 3D ROI creation and manipulation using polygonal (surface) and polyhedral (volume) meshes.

Extracting a nucleotide segment from a FASTA-formatted file

Icy wrapper for the Apache Commons CSV library.

The Apache Commons Lang Library for Icy

ROI Inclusion Analysis plugin for Icy.

A simple tool to correct chromatic shifts as well as temporal drift (including translations and rotations), based on spectral correlation.