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Embed CPython in Java through JNI

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

Use Icy as an image viewer from Matlab

Creating an AGP file from a FASTA-formatted scaffold sequence file

ROI Statistics plugin for Icy

creating figures that represent the positions of long repeats in a chromosome

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi

SLIC: Simple Linear Iterative Clustering

An Icy plugin implementing this popular segmentation technique

Distance Transforms Plugin for Icy

Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances

Block Mapping and Gathering with Entropy