Explore projects

Maestro Cluster documentation

Utilities to collapse reads in bam files to their 5' end

Serratus project, read downloader using AWS Batch

Shiny app for the analysis of single cell data

Some helpers for my HTS snakemake workflows.

Some helpers for HTS data analyses.

Some helpers to call DESeq2 using rpy2 in python.

Defining small RNAs in C. elegans.

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Running Jazayeri Simulations on Floelling Experiments

Assembling SSU

AEGIS2018 course practical

import from github