fastq

Genome de novo assembly from raw paired-end FASTQ files

Assembling SSU

Downloading FASTQ files from ENA

Estimating standard descriptive statistics from FASTQ file

Cropping reads to reach homogeneous composition among positions

Estimating standard descriptive statistics from FASTQ files

Fast removal of contaminating reads from FASTQ file(s)

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file