fastq

Genome de novo assembly from raw paired-end FASTQ files

Downloading FASTQ files from ENA

Estimating standard descriptive statistics from FASTQ files

Fast removal of contaminating reads from FASTQ file(s)

Estimating standard descriptive statistics from FASTQ file

Cropping reads to reach homogeneous composition among positions

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file