Explore projects

Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses

Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

This project contains the latest PhageTerm software source repository (multi machine version).

testing a dedicated virtualbox runner for gitlab

building an alpinelinux docker image for CI

B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ

Big Image Tools - Read and write large 2D images with Icy

Process the droplet chips using snakemake pipelines.

Keeping R and Python specific snippets

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.

Creating figures showing linear maps between genomes