Explore projects

Fast removal of contaminating reads from FASTQ file(s)

Running Jazayeri Simulations on Floelling Experiments

Downloading genome assembly files from GenBank or RefSeq

Course material for the part about R and RStudio of the PhD course.

Translating and back-translating codon and amino-acid sequence files

This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.

An ICY plugin for stitching the fields presented on well plates

Estimating standard descriptive statistics from FASTQ file

Fast trimming of sequencing reads

Docker build from https://github.com/YoshitakaMo/localcolabfold

Clipper - A polygon clipping library

This Icy plugin allows to compute and display the histogram of a sequence, with a more accurate control on the histogram parameters. It also enables the computation of histograms on ROIs.

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file

Smith-Waterman-based Average Nucleotide Identity