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Some scripts to plot results from my HTS pipelines.

Evolutionary Contact wrapper for ARIA software

This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15

Deprojection of a 2D segmentation onto a 2.5D mesh

script that makes a visual representation of a spot containing ICE.

A web interface for the Joint Analysis of GWAS Summary Statistics.

Find characters shared by a group of aligned sequences

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Napari plugin to ease manual correction of epithelial movie segmentation

Template to create new Icy extension (POM file and base plugin class)

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.