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add Krona to Shiny

Fiji macros to analyze/display multicellular rosette (cell coordination number and number of vertices)

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Compute RNA expression around a reference position

Spot detector plugin for Icy

Napari plugin to ease manual correction of epithelial movie segmentation

Some scripts to plot results from my HTS pipelines.

Active Contours plugin for Icy

This library contains the functions to convert TensorFlow 1 tensors into Icy sequences and viceversa. This library is compatible with TensorFlow versions up to 1.15

description

building an alpinelinux docker image for CI

Low-level functions for interactive communication between Icy and Matlab.