Explore projects

Insitut Pasteur - Integrative Structural Biology School - 2016

Remote bio-image analysis course with python. Website: https://iah-public.pages.pasteur.fr/20241008_remote_python_bioimage_analysis_course_day2

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

Python utilities to deal with codon usage.

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

Embed CPython in Java through JNI

Walkthrough from a conda command line installation to a container (docker or singularity) for maestro, Inception gpulab, reproduceable, sharing among colleagues.

Work in progress.

Pytorch implementation of the Spline dist cell segmentation method

MsgPack Core library for Icy.

https://msgpack.org/

A cookie cutter for the genetic statistics unit

Interface between MaggotUBA and the Nyx tagging UI

StaPa backoffice app