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Protocols (GUI part) plugin for Icy

Sequence blocks plugin for Icy. This plugin deliver a set of Sequence tools to be used with Protocols (Graphical Programming).

ROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).

Spot Tracking plugin for Icy

Track Manager plugin for Icy

Spot Tracking Blocks plugin for Icy. This plugin brings Spot Tracking tools into Protocols (Graphical Programming)

Track Motion Profiler plugin for Icy. This plugin adds Motion Profiler and Motion Filter processors to Track Manager.

ROI Statistics plugin for Icy

ROI Inclusion Analysis plugin for Icy.

Script Editor plugin for Icy

Micro-Manager plugin for Icy

Blocks (Protocols) for Micro-Manager plugin

Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Fast Fourier Transform Plugin for Icy

Distance Transforms Plugin for Icy

Minimum Spanning Tree-based clustering