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Jython library for Icy

Creating an AGP file from a FASTA-formatted scaffold sequence file

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

Insubstantial project (https://github.com/Insubstantial) clone for Icy (fixes + minors customizations). Previous version of the repository can be found at https://github.com/Icy-imaging/Icy-Insubstantial

Fast Fourier Transform Plugin for Icy

Plugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.

MetroloSPIM plugin for Icy

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.