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Bioimage Analysis / Icy / Extensions / EzPlug
GNU General Public License v3.0 onlyEzPlug plugin for Icy
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Bioimage Analysis / Icy / Extensions / Kernel Extension
GNU General Public License v3.0 onlyUpdated -
Icy is an open community platform for bioimage informatics
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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GIPhy / MSTclust
GNU Affero General Public License v3.0Minimum Spanning Tree-based clustering
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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
Bioimage Analysis / Icy / Extensions / ROI blocks
GNU General Public License v3.0 onlyROI blocks plugin for Icy. This plugin deliver a set of ROI tools to be used with Protocols (Graphical Programming).
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Bioimage Analysis / Icy / Extensions / Invert
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy / Extensions / Intensity Projection
GNU General Public License v3.0 onlyIntensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.
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Bioimage Analysis / Icy / Extensions / Distance Profiler Processor
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy / Extensions / ROI to Detection
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy / Extensions / Detection to ROI
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy / Extensions / Color picker threshold
GNU General Public License v3.0 onlyImage segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning
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Bioimage Analysis / Icy / Extensions / NHerve Toolbox
GNU General Public License v3.0 onlyMy own toolbox used for all the plugins I developed.
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Bioimage Analysis / Icy / Extensions / NHerve Matrix
GNU General Public License v3.0 onlyA patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/
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Bioimage Analysis / Icy / Extensions / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
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