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Compute the intensity profile of ROI contour along Z (3D) and T (timelaps) dimension. Generates a workbook document containing all the intensity values for each point of the contour, can be plotted as graph or exported as CSV

A toolbox to chain image analysis processes

Icy plugin for applying median filter on 2D and 3D sequences

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols

Distance Transforms Plugin for Icy

Spot Tracking Blocks plugin for Icy. This plugin brings Spot Tracking tools into Protocols (Graphical Programming)

Code repository for the paper "An algorithm to build synthetic temporal contact networks based on close-proximity interactions data"

LIANA: a LIgand-receptor ANalysis frAmework