Explore projects

An R package that, once installed, allows one to create an R Markdown document from a template defined by the SABER group

An ICY plugin for stitching the fields presented on well plates

Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly

Pipeline to run CMS in large-scale analyses

Project Testing for the Core-Genome EPA scripts Checking for problems with dependencies, code bugs, and other problems that might have been unseen

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

MetroloSPIM plugin for Icy

Plugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.

Fast Fourier Transform Plugin for Icy

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

The impact of genetic diversity on gene essentiality within the E. coli species