Explore projects
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Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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GIPhy / contig_info
GNU Affero General Public License v3.0Estimating standard descriptive statistics from contig sequences
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Supplementary material for the paper: "Leishmania genome dynamics during environmental adaptation reveals strain-specific differences in gene copy number variation, karyotype instability, and telomeric amplification"
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GIPhy / findSynapomorphies
GNU Affero General Public License v3.0Find characters shared by a group of aligned sequences
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Course material for the part about R and RStudio of the PhD course.
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Singularity to wrap minimap2 and miniasm in order to perform a long read de novo assembly
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bio-singularity / SMARTdenovo
GNU Affero General Public License v3.0SMARTdenovo assembly tool wrapped into a singularity for HPC cluster executions
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