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StaPa Membership Portal

Accompanying data and analyses for the paper by Gabiane et al.

From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM

http://hub05.hosting.pasteur.fr/aduval/SimulPopB_shiny/

Sources for the server running at http://hub05.hosting.pasteur.fr/NMD_complexes/ Allows exploration of interactions around NMD complexes (Dehecq et al., EMBOJ 2018)

Source of the shiny server that presents results obtained by large scale double mutant yeast screens (GIM): http://hub05.hosting.pasteur.fr/GIM_interactions/

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

coGSEA

couchapp and input data parser to create capsuledb