Explore projects

https://github.com/dialvarezs/alphafold

From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM

import from github

Scripts to inject attc cassette in genome for Integron_Finder analysis

The impact of genetic diversity on gene essentiality within the E. coli species

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

The impact of genetic diversity on gene essentiality within the E. coli species

script that makes a visual representation of a spot containing ICE.

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Pytorch implementation of the Spline dist cell segmentation method