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Webapp pour l'analyse de trajectoires

This repo contains the script, model and parameters needed to train a StarDist model on the simulated dataset used in the ISBI Grand Challenge on Single-Particle Tracking.

script that makes a visual representation of a spot containing ICE.

Pytorch implementation of the Spline dist cell segmentation method

scientific python course given in 2021

Scripts to inject attc cassette in genome for Integron_Finder analysis

Region segmentation

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

One is the interaction layer between the Alyx database (metadatas) and your programmatic interface (python).

compress nd2 files