Explore projects

scientific python course given in 2021

HUB transcriptomic snakemake pipeline

Icy is an open community platform for bioimage informatics

Compute RNA expression around a reference position

Evolutionary Contact wrapper for ARIA software

script that makes a visual representation of a spot containing ICE.

Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences.

https://rapid-peptide-generator.readthedocs.io

Automatic detection of epithelial cell events as cell extrusion

A web interface for the Joint Analysis of GWAS Summary Statistics.

AntiBody Sequence Database, a website to easily build a set of antibody chain sequences gathered from different sources. https://absd.pasteur.cloud/

Tools to design and analyse CRISPRi experiments

Pytorch implementation of the Spline dist cell segmentation method

Script Editor plugin for Icy

Napari plugin to ease manual correction of epithelial movie segmentation