Explore projects

HUB transcriptomic snakemake pipeline

Icy is an open community platform for bioimage informatics

Tools to design and analyse CRISPRi experiments

Repository for snakemake rules

Script Editor plugin for Icy

Compute RNA expression around a reference position

Some scripts to plot results from my HTS pipelines.

Utilities to collapse reads in bam files to their 5' end

Evolutionary Contact wrapper for ARIA software

script that makes a visual representation of a spot containing ICE.

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences.

https://rapid-peptide-generator.readthedocs.io

Automatic detection of epithelial cell events as cell extrusion