Commit 9380aecf authored by Bertrand  NÉRON's avatar Bertrand NÉRON
Browse files

add cover page for all macsydb databes

parent 120048fb
<!DOCTYPE html>
<html lang="en" xmlns="">
<meta charset="UTF-8">
<title>MacsyDB databases</title>
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background-size: cover;
width: 100%;
height: 430px;
position: relative;
overflow-x: hidden;
#content {
width: 80%;
margin-top: 100px;
padding-left: 10%;
#content h1 {
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#references {
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#references p{
.citation {
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<div id="top-header">
<a href="" target="_blank">
<div id="iplogo"></div>
<h2 id="tagline">Pour la recherche, pour la santé, pour demain</h2>
<div id="head-pasteur"></div>
<div class="clear"></div>
<div id="image-top" class="img-filter"
<h1 style="color:#eee; font-size:50px; font-weight:700; font-family:Merriweather,serif; text-align:center;
padding: 100px 0 0;">MacsyDB databases</h1>
<div id="social-links">
<a data-txt="Github" data-icon="F" class="icon hover-label" href=""
<div id="content">
<h1>This website is the home of MacsyDB databases</h1>
<p>The information presented here was originally obtained using the MacSyFinder program (or earlier prototypes
of this program),
eventually with some subsequent curation (check the literature references below).</h1>
<p>It allows to query a dataset of protein secretion systems,
conjugative and mobilization elements, and extracellular capsules retrieved from over 2000 complete genome
<li>Protein secretion systems: <a
<li>Non-Flagellar Type III secretion systems
(partly superseded by <a href="">TXSSdb</a>): 
<a href="">Secreton</a></li>
<li>Conjugative and Mobilization systems: <a
<li>Extracellular capsules: <a href="">CapsuleDB</a>
<p>The profiles and models used are freely available in our website for systematic searches in the dedicated
<a href="http://galaxy.pasteur.frGalaxy">Galaxy web server</a> (search for txsscan, conjscan, capsulefinder
or in the standalone version in conjunction with MacSyFinder and MacSyView
(MacSyFinder and  MacSyView are also freely available on <a href="">
<svg class="octicon octicon-mark-github" height="24" viewBox="0 0 16 16" width="24">
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The documentation on these programs can be found at <a
<p>Visit our website: <a href="">Microbial
evolutionary genomics group</a>.</p>
<div id="references">
<h2>References for citation purposes:</h2>
<div class="citation">
<span class="citation_author">Abby SS</span>,
<span class="citation_author">Rocha EPC </span>
<span class="citation_date">(2012)</span>
<a href="" target="_blank">
<span class="citation_article_title">The Non-Flagellar Type III Secretion System Evolved from the Bacterial
Flagellum and Diversified into Host-Cell Adapted Systems.</span></a>
<span class="citation_journal_title">PLoS Genet</span>
<span class="citation_issue"> 8(9):</span>
<span class="citation_start_page">e1002983.</span>
<div class="citation">
<span class="citation_author">Guglielmini, J. et al.</span>,
<span class="citation_article_title">Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion.</span>
<span class="citation_date">(2014)</span>.
<span class="citation_journal_title"> Nucleic Acids Res.</span>,
<a href="">doi:10.1093/nar/gku194</a>.
<div class="citation">
<span class="citation_author">Abby SS,</span>
<span class="citation_author">Cury J,</span>
<span class="citation_author">Guglielmini J,</span>
<span class="citation_author">Néron B,</span>
<span class="citation_author">Touchon M,</span>
<span class="citation_author">Rocha EPC.</span>
<span class="citation_date">(2016)</span>
<span class="citation_article_title">Identification of protein secretion systems in bacterial genomes.</span>
<span class="citation_journal_title">Scientific Reports</span>.
<span class="citation_issue">16;6:</span>
<span class="citation_start_page">23080</span>
<a href="">doi:10.1038/srep23080</a>.
<div class="citation">
<span class="citation_author">Rendueles O,</span>
<span class="citation_author">Garcia-Garcera M,</span>
<span class="citation_author">Néron B,</span>
<span class="citation_author">Touchon M,</span>
<span class="citation_author">Rocha EP.</span> 
<span class="citation_date">(submitted)</span>
<span class="citation_article_title">Abundance and co-occurrence of extracellular capsules among Prokaryotes is epistatic and increases
environmental breadth.</span>
<div id="footer">
Visit our website:
<a href="">Microbial evolutionary genomics
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