... | @@ -141,7 +141,7 @@ One recurrent segmentation error can be a large cell wrongly split in two cells, |
... | @@ -141,7 +141,7 @@ One recurrent segmentation error can be a large cell wrongly split in two cells, |
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<img width="80%" src="uploads/e45a313e28305ae6844e24bac17cdbc5/mergeInside.png">
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<img width="80%" src="uploads/e45a313e28305ae6844e24bac17cdbc5/mergeInside.png">
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</p>
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</p>
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## Sanity check
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## Sanity check :white_check_mark:
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**This option performs several checks to ensure that the files follows EpiCure's standards and can fix some errors.**
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**This option performs several checks to ensure that the files follows EpiCure's standards and can fix some errors.**
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... | @@ -153,7 +153,7 @@ It also checks if the labels seemed ok or if something is weird. |
... | @@ -153,7 +153,7 @@ It also checks if the labels seemed ok or if something is weird. |
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**Allows to create group of cells (classify them).** Cells can be manually assigned to a cell group by clicking on them. This is useful to distinguish different type of cells visually or/and in the analysis in the Outputs options.
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**Allows to create group of cells (classify them).** Cells can be manually assigned to a cell group by clicking on them. This is useful to distinguish different type of cells visually or/and in the analysis in the Outputs options.
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`Group name` allows to choose the name to give to a new Group of cells, or to assign a cell to the current `Group name` group.
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`Group name` allows to choose the name to give to a new Group of cells, or to assign a cell to the current `Group name` group. Write a new name to enter a new group, or choose in the list an existing group to insert the cell in that group.
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A cell can be assigned to the current group with :round_pushpin: **<kbd>Shift+Left click</kbd> on the cell**.
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A cell can be assigned to the current group with :round_pushpin: **<kbd>Shift+Left click</kbd> on the cell**.
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:round_pushpin: **<kbd>Shift+Right click</kbd> removes the cell under the cursor from its current group**, and set it as unassigned.
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:round_pushpin: **<kbd>Shift+Right click</kbd> removes the cell under the cursor from its current group**, and set it as unassigned.
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... | @@ -174,7 +174,7 @@ When the segmentation is :round_pushpin: **saved by clicking on <kbd>s</kbd>** w |
... | @@ -174,7 +174,7 @@ When the segmentation is :round_pushpin: **saved by clicking on <kbd>s</kbd>** w |
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This option allows to do operations on several neighboring cells at once, by selecting a region.
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This option allows to do operations on several neighboring cells at once, by selecting a region.
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## Draw a selection/Region of Interest
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## Draw a selection/Region of Interest :white_square_button:
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When you select the `Selection option` in the `Edit` panel, press the first button `Draw/Select ROI` to draw a new shape or select an existing one. The shapes should be in the `Drawings` layer, by default not visible. When you click on this button, the layer will be visible and active.
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When you select the `Selection option` in the `Edit` panel, press the first button `Draw/Select ROI` to draw a new shape or select an existing one. The shapes should be in the `Drawings` layer, by default not visible. When you click on this button, the layer will be visible and active.
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