@@ -171,7 +171,9 @@ When the segmentation is :round_pushpin: **saved by clicking on <kbd>s</kbd>** w
## Automatic cell group assignement
Options are proposed to automatically assign several cells into one group, based on intensity measurement.
Options are proposed to automatically assign several cells into one group.
### Group cells based on intensity measurement.
To set this option, click on the `Group from track intensity...` button in the `Group options` panel.
It opens-up an interface that allows to choose the criteria for the cell classification.
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@@ -183,6 +185,16 @@ For example it can be a probability map that are calculated by [DeXtrusion](http
For each track, the intensity will be measured in all the pixels of the cell at each time frame. You can choose whether you want to measure the mean value of these intensities, or the sum/max/min/median. Then fix a threshold to consider the track as positive if the measured value is above this threshold.
### Group cells according to events (dividing/extruding)
This option allows you to automatically group cells that will divide or extrude into a `Dividing` or `Extruding` group (or other group for other events).
Click the `Group from events...` button to open the parameter interface of this option.
You can choose which type of events to use to classify the cells.
Click on `Apply` to automatically set all the cells that divide (or extrude, or other event types) into the `Dividing` group (or `Extruding`).
If the option `show groups` of the main panel is selected, you will directly see which cells were assigned to this group when the processing will be finished.
