@@ -93,7 +93,7 @@ To finish the track editing, <kbd>right-click</kbd> and a confirmation message w
Options to ensure clean and correct EpiCure files.
## Remove border cells
Remove all segmented cells that touch the spatial borders of the image. This parameter allows to get rid of cells that are partially outside of the imaged region and thus not complete.
**Remove all segmented cells that touch the spatial borders of the image.** This parameter allows to get rid of cells that are partially outside of the imaged region and thus not complete.
The parameter `Border width` allows to extend the requirement for the cells to be considered as fully inside. Cells that have at least one pixel at a distance less than `Border width` pixels from the image limits will be removed.
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@@ -102,3 +102,11 @@ Note that this action will be applied to all the time frames of the movie, and c
**This option performs several checks to ensure that the files follows EpiCure's standards and can fix some errors.**
For example, the tracks must not have frame gaps (missing one frame). If that happens, the `sanity check` option will detect it and fix it by splitting the gap in two different gaps.
If some napari layers had been wrongly closed, this step will also re-open them.
It also checks if the labels seemed ok or if something is weird.