voc curation updated v14.8.0, B.1.525 small bug fixed for D614G

README.md

@@ -196,6 +196,11 @@ Hub-CDB and Institut Pasteur
 <br /><br />
 ## WHAT'S NEW IN
 
+### v14.8.0
+
+1) Small bug fixed for B.1.525 in voc.txt
+
+
 ### v14.7.0
 
 1) B.1.620 added

dataset/20210511_voc.gmt → dataset/20210517_voc.gmt

 B.1.1.7	B.1.1.7	MN908947_Ampliseq:3208-3218	MN908947_Ampliseq:5329-5339	MN908947_Ampliseq:6895-6905	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:21705-21721	MN908947_Ampliseq:21931-21944	MN908947_Ampliseq:23004-23014	MN908947_Ampliseq:23212-23222	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23545-23555	MN908947_Ampliseq:23650-23660	MN908947_Ampliseq:24447-24457	MN908947_Ampliseq:24855-24865	MN908947_Ampliseq:27913-27923	MN908947_Ampliseq:27989-27999	MN908947_Ampliseq:28052-28062	MN908947_Ampliseq:28221-28231	MN908947_Ampliseq:28222-28232	MN908947_Ampliseq:28223-28233	MN908947_Ampliseq:28918-28928
-B.1.351	B.1.351	MN908947_Ampliseq:1000-1010	MN908947_Ampliseq:5171-5181	MN908947_Ampliseq:10264-10274	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:21742-21752	MN908947_Ampliseq:22147-22157	MN908947_Ampliseq:22754-22764	MN908947_Ampliseq:22953-22963	MN908947_Ampliseq:23004-23014	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23605-23615	MN908947_Ampliseq:25504-25514	MN908947_Ampliseq:25845-25855	MN908947_Ampliseq:26397-26407	MN908947_Ampliseq:28828-28838	MN908947_Ampliseq:23344-23354
+B.1.351	B.1.351	MN908947_Ampliseq:1000-1010	MN908947_Ampliseq:5171-5181	MN908947_Ampliseq:10264-10274	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:21742-21752	MN908947_Ampliseq:22147-22157	MN908947_Ampliseq:22754-22764	MN908947_Ampliseq:22953-22963	MN908947_Ampliseq:23004-23014	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23605-23615	MN908947_Ampliseq:25504-25514	MN908947_Ampliseq:25845-25855	MN908947_Ampliseq:26397-26407	MN908947_Ampliseq:28828-28838
 P.1	P.1	MN908947_Ampliseq:3769-3779	MN908947_Ampliseq:5589-5599	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:17200-17210	MN908947_Ampliseq:21555-21565	MN908947_Ampliseq:21562-21572	MN908947_Ampliseq:21579-21589	MN908947_Ampliseq:21915-21925	MN908947_Ampliseq:22073-22083	MN908947_Ampliseq:22753-22763	MN908947_Ampliseq:22953-22963	MN908947_Ampliseq:23004-23014	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23466-23476	MN908947_Ampliseq:24583-24593	MN908947_Ampliseq:28108-28118	MN908947_Ampliseq:28210-28220	MN908947_Ampliseq:28453-28463
 A.23.1	A.23.1	MN908947_Ampliseq:11171-11181	MN908947_Ampliseq:11207-11217	MN908947_Ampliseq:21808-21818	MN908947_Ampliseq:21974-21984	MN908947_Ampliseq:22602-22612	MN908947_Ampliseq:23342-23352	MN908947_Ampliseq:23545-23555	MN908947_Ampliseq:28085-28095	MN908947_Ampliseq:28108-28118	MN908947_Ampliseq:28819-28829	MN908947_Ampliseq:29468-29478
-B.1.525	B.1.525	MN908947_Ampliseq:14348-14358	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:21705-21721	MN908947_Ampliseq:21658-21668	MN908947_Ampliseq:22953-22963	MN908947_Ampliseq:23534-23544	MN908947_Ampliseq:24165-24175	MN908947_Ampliseq:26246-26256	MN908947_Ampliseq:26708-26718	MN908947_Ampliseq:28218-28231
+B.1.525	B.1.525	MN908947_Ampliseq:14348-14358	MN908947_Ampliseq:11228-11247	MN908947_Ampliseq:21705-21721	MN908947_Ampliseq:21658-21668	MN908947_Ampliseq:22953-22963	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23534-23544	MN908947_Ampliseq:24165-24175	MN908947_Ampliseq:26246-26256	MN908947_Ampliseq:26708-26718	MN908947_Ampliseq:28218-28231
 B.1.427	B.1.427	MN908947_Ampliseq:1000-1010	MN908947_Ampliseq:9679-9689	MN908947_Ampliseq:14349-14359	MN908947_Ampliseq:16335-16345	MN908947_Ampliseq:16955-16965	MN908947_Ampliseq:21541-21551	MN908947_Ampliseq:21959-21969	MN908947_Ampliseq:22858-22868	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:25504-25514	MN908947_Ampliseq:28828-28838
 B.1.429	B.1.429	MN908947_Ampliseq:1000-1010	MN908947_Ampliseq:12819-12829	MN908947_Ampliseq:14349-14359	MN908947_Ampliseq:16955-16965	MN908947_Ampliseq:21541-21551	MN908947_Ampliseq:21959-21969	MN908947_Ampliseq:22858-22868	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:25504-25514	MN908947_Ampliseq:28828-28838
 B.1.616	B.1.616	MN908947_Ampliseq:1000-1010	MN908947_Ampliseq:4177-4187	MN908947_Ampliseq:5119-5129	MN908947_Ampliseq:6988-6998	MN908947_Ampliseq:9684-9694	MN908947_Ampliseq:11024-11034	MN908947_Ampliseq:14349-14359	MN908947_Ampliseq:15846-15856	MN908947_Ampliseq:18449-18459	MN908947_Ampliseq:21018-21028	MN908947_Ampliseq:21429-21439	MN908947_Ampliseq:21699-21709	MN908947_Ampliseq:21928-21938	MN908947_Ampliseq:21931-21944	MN908947_Ampliseq:22147-22157	MN908947_Ampliseq:22951-22961	MN908947_Ampliseq:23344-23354	MN908947_Ampliseq:23466-23476	MN908947_Ampliseq:23508-23518	MN908947_Ampliseq:24349-24359	MN908947_Ampliseq:25062-25072	MN908947_Ampliseq:25504-25514	MN908947_Ampliseq:26245-26255	MN908947_Ampliseq:26273-26283	MN908947_Ampliseq:26836-26846	MN908947_Ampliseq:27207-27246	MN908947_Ampliseq:27698-27708	MN908947_Ampliseq:28238-28248

dataset/20210511_voc.txt → dataset/20210517_voc.txt

@@ -69,7 +69,7 @@ B.1.525	MN908947_Ampliseq	11233	GTCTGGTTTT	G	ORF1ab:SGF_3675-3677_del
 B.1.525	MN908947_Ampliseq	21710	ATACATG	A	S:HV_69-70_del
 B.1.525	MN908947_Ampliseq	21663	A	G	S:Q52R
 B.1.525	MN908947_Ampliseq	22958	G	A	S:E484K
-B.1.351	MN908947_Ampliseq	23349	A	G	S:D614G
+B.1.525	MN908947_Ampliseq	23349	A	G	S:D614G
 B.1.525	MN908947_Ampliseq	23539	G	C	S:Q677H
 B.1.525	MN908947_Ampliseq	24170	T	C	S:F888L
 B.1.525	MN908947_Ampliseq	26251	C	T	E:L21F

dev/convert.voc_gatk_2_gmt.R

@@ -12,7 +12,7 @@
 
 rm(list = ls())
 
-date <- "20210511"
+date <- "20210517"
 expanse <- 5
 file.in <- "_voc.txt"
 file.out <- "_voc.gmt"