Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Gael MILLOT
cute_little_R_functions
Commits
0ff9f35f
Commit
0ff9f35f
authored
Oct 04, 2020
by
Gael
Browse files
README improved
parent
0719a94d
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
0ff9f35f
...
...
@@ -57,67 +57,67 @@ The present repository of Cute Little R functions is for beta testing. Ultimatel
| Object analysis | |
| --- | --- |
|
**
fun_check() | check class, type, length, etc., of objects |
|
**
fun_secu() | verif that local variables are not present in other envs |
|
**
fun_info() | recover object information |
|
**
fun_head() | head of the left or right of big 2D objects |
|
**
fun_tail() | tail of the left or right of big 2D objects |
|
**
fun_comp_1d() | comparison of two 1D datasets (vectors, factors, 1D tables) |
|
**
fun_comp_2d() | comparison of two 2D datasets (row & col names, dimensions, etc.) |
|
**
fun_comp_list() | comparison of two lists |
|
**
fun_test() | test combinations of argument values of a function and return errors (and graphs) |
|
**fun_check()
**
| check class, type, length, etc., of objects |
|
**fun_secu()
**
| verif that local variables are not present in other envs |
|
**fun_info()
**
| recover object information |
|
**fun_head()
**
| head of the left or right of big 2D objects |
|
**fun_tail()
**
| tail of the left or right of big 2D objects |
|
**fun_comp_1d()
**
| comparison of two 1D datasets (vectors, factors, 1D tables) |
|
**fun_comp_2d()
**
| comparison of two 2D datasets (row & col names, dimensions, etc.) |
|
**fun_comp_list()
**
| comparison of two lists |
|
**fun_test()
**
| test combinations of argument values of a function and return errors (and graphs) |
| Object modification | |
| --- | --- |
|
**
fun_name_change() | check a vector of character strings and modify any string if present in another vector |
|
**
fun_df_remod() | remodeling a data frame to have column name as a qualitative values and vice-versa |
|
**
fun_round() | rounding number if decimal present |
|
**
fun_mat_rotate() | 90° clockwise matrix rotation |
|
**
fun_mat_num2color() | convert a numeric matrix into hexadecimal color matrix |
|
**
fun_mat_op() | assemble several matrices with operation |
|
**
fun_mat_inv() | return the inverse of a square matrix |
|
**
fun_mat_fill() | fill the empty half part of a symmetric square matrix |
|
**
fun_permut() | progressively breaks a vector order |
|
**
fun_slide() | return a computation made on a vector using a sliding window |
|
**fun_name_change()
**
| check a vector of character strings and modify any string if present in another vector |
|
**fun_df_remod()
**
| remodeling a data frame to have column name as a qualitative values and vice-versa |
|
**fun_round()
**
| rounding number if decimal present |
|
**fun_mat_rotate()
**
| 90° clockwise matrix rotation |
|
**fun_mat_num2color()
**
| convert a numeric matrix into hexadecimal color matrix |
|
**fun_mat_op()
**
| assemble several matrices with operation |
|
**fun_mat_inv()
**
| return the inverse of a square matrix |
|
**fun_mat_fill()
**
| fill the empty half part of a symmetric square matrix |
|
**fun_permut()
**
| progressively breaks a vector order |
|
**fun_slide()
**
| return a computation made on a vector using a sliding window |
| Graphics management | |
| --- | --- |
|
**
fun_width() | window width depending on classes to plot |
|
**
fun_open() | open a GUI or pdf graphic window |
|
**
fun_prior_plot() | set graph param before plotting (erase axes for instance) |
|
**
fun_scale() | select nice label numbers when setting number of ticks on an axis |
|
**
fun_inter_ticks() | define coordinates of secondary ticks |
|
**
fun_post_plot() | set graph param after plotting (axes redesign for instance) |
|
**
fun_close() | close specific graphic windows |
|
**fun_width()
**
| window width depending on classes to plot |
|
**fun_open()
**
| open a GUI or pdf graphic window |
|
**fun_prior_plot()
**
| set graph param before plotting (erase axes for instance) |
|
**fun_scale()
**
| select nice label numbers when setting number of ticks on an axis |
|
**fun_inter_ticks()
**
| define coordinates of secondary ticks |
|
**fun_post_plot()
**
| set graph param after plotting (axes redesign for instance) |
|
**fun_close()
**
| close specific graphic windows |
| Standard graphics | |
| --- | --- |
|
**
fun_empty_graph() | text to display for empty graphs |
|
**fun_empty_graph()
**
| text to display for empty graphs |
| gg graphics | |
| --- | --- |
|
**
fun_gg_palette() | ggplot2 default color palette |
|
**
fun_gg_just() | ggplot2 justification of the axis labeling, depending on angle |
|
**
fun_gg_get_legend() | get the legend of ggplot objects |
|
**
fun_gg_point_rast() | ggplot2 raster scatterplot layer |
|
**
fun_gg_boxplot() | ggplot2 boxplot + background dots if required |
|
**
fun_gg_scatter() | ggplot2 scatterplot + lines (up to 6 overlays totally) |
|
**
fun_gg_empty_graph() | text to display for empty graphs |
|
**fun_gg_palette()
**
| ggplot2 default color palette |
|
**fun_gg_just()
**
| ggplot2 justification of the axis labeling, depending on angle |
|
**fun_gg_get_legend()
**
| get the legend of ggplot objects |
|
**fun_gg_point_rast()
**
| ggplot2 raster scatterplot layer |
|
**fun_gg_boxplot()
**
| ggplot2 boxplot + background dots if required |
|
**fun_gg_scatter()
**
| ggplot2 scatterplot + lines (up to 6 overlays totally) |
|
**fun_gg_empty_graph()
**
| text to display for empty graphs |
| Graphic extraction | |
| --- | --- |
|
**
fun_trim() | display values from a quantitative variable and trim according to defined cut-offs |
|
**
fun_segmentation() | segment a dot cloud on a scatterplot and define the dots from another cloud outside the segmentation |
|
**fun_trim()
**
| display values from a quantitative variable and trim according to defined cut-offs |
|
**fun_segmentation()
**
| segment a dot cloud on a scatterplot and define the dots from another cloud outside the segmentation |
| Import | |
| --- | --- |
|
**
fun_pack() | check if R packages are present and import into the working environment |
|
**
fun_python_pack() | check if python packages are present |
|
**fun_pack()
**
| check if R packages are present and import into the working environment |
|
**fun_python_pack()
**
| check if python packages are present |
| Print / Exporting results (text & tables) | |
| --- | --- |
|
**
fun_report() | print string or data object into output file |
|
**
fun_get_message() | return error/warning/other messages of an expression (that can be exported) |
|
**fun_report()
**
| print string or data object into output file |
|
**fun_get_message()
**
| return error/warning/other messages of an expression (that can be exported) |
## HOW TO LOAD AND MANIPULATE cute_little_R_functions
...
...
@@ -125,25 +125,23 @@ The present repository of Cute Little R functions is for beta testing. Ultimatel
Download the desired Tagged version, never the current master, at https://gitlab.pasteur.fr/gmillot/cute_little_R_functions/-/tags
For that:
For that:
1) Select the desired tagged release
2) Browse files
3) Display the cute_little_R_functions.R as raw file
4) Source the file using the url address. Example
`
source("https://gitlab.pasteur.fr/gmillot/cute_little_R_functions/-/raw/557976d693e37b499b89c76e4b2142846eb89d5b/cute_little_R_functions.R")
`
1) Select the desired tagged release
2) Browse files
3) Display the cute_little_R_functions.R as raw file
4) Source the file using the url address. Example:
`source("https://gitlab.pasteur.fr/gmillot/cute_little_R_functions/-/raw/557976d693e37b499b89c76e4b2142846eb89d5b/cute_little_R_functions.R")`
Description of the functions is at the beginning of the function body. To obtain it:
Either read the cute_little_functions.docx (or open the cute_little_R_functions.R file).
Or in the R/RStudio console, type the name of the function without brackets. Example : `fun_info`.
1)
Either read the cute_little_functions.docx (or open the cute_little_R_functions.R file).
2)
Or in the R/RStudio console, type the name of the function without brackets. Example :
`fun_info`
.
## VERSIONS
...
...
@@ -370,12 +368,9 @@ fun_refactorization()
### v1.3
Everything
1) fun_1D_comp() function improved: provide the common elements, common names and common levels if exist
### v1
Everything
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment
