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Commit 36126360 authored by Gael  MILLOT's avatar Gael MILLOT
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release v11.8: Error messages imporved so that now nextflow does not display...

release v11.8: Error messages imporved so that now nextflow does not display all subsequent error messages because of empty file when execution is stopped by an error
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...@@ -85,10 +85,9 @@ Installation of:<br /> ...@@ -85,10 +85,9 @@ Installation of:<br />
Optional installation (to avoid reccurent message) of:<br /> Optional installation (to avoid reccurent message) of:<br />
[Gocryptfs](https://github.com/rfjakob/gocryptfs), `sudo apt install gocryptfs` for Linux ubuntu<br /> [Gocryptfs](https://github.com/rfjakob/gocryptfs), `sudo apt install gocryptfs` for Linux ubuntu<br />
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### 2. Local running (personal computer) ### 2. Local running (personal computer)
#### 2.1. *main.nf* file in the personal computer #### 2.1. *main.nf* file in the personal computer
- Mount a server if required: - Mount a server if required:
...@@ -210,7 +209,7 @@ chmod 755 bin/*.* ...@@ -210,7 +209,7 @@ chmod 755 bin/*.*
By default, all the results are returned in a *result* folder where the *main.nf* executed file is located (created if does not exist). This can be changed using the *out_path_ini* parameter of the *nextflow.config* file. By default, each execution produces a new folder named *repertoire_profiler_\<ID\>*, created inside the *result* folder and containing all the outputs of the execution. The name of the folder can be changed using the *result_folder_name* parameter of the *nextflow.config* file. The new name file be followed by an \<ID\> in all cases. By default, all the results are returned in a *result* folder where the *main.nf* executed file is located (created if does not exist). This can be changed using the *out_path_ini* parameter of the *nextflow.config* file. By default, each execution produces a new folder named *repertoire_profiler_\<ID\>*, created inside the *result* folder and containing all the outputs of the execution. The name of the folder can be changed using the *result_folder_name* parameter of the *nextflow.config* file. The new name file be followed by an \<ID\> in all cases.
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An example of results obtained with the dataset is present at this address: https://zenodo.org/records/14514657/files/repertoire_profiler_1734527507.zip . An example of results obtained with the dataset is present at this address: https://zenodo.org/records/14537797/files/repertoire_profiler_1734720386.zip.
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Complete informations are in the Protocol 144-rev0 Ig clustering - Immcantation.docx (contact Gael Millot). Complete informations are in the Protocol 144-rev0 Ig clustering - Immcantation.docx (contact Gael Millot).
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