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Created with Raphaël 2.2.025Feb14131211531Jan29282220Dec191817161312114328Nov38Oct24Jul191129May256229Apr8Mar7654120Dec1817151429Nov63Oct30Aug28242310928Jun2722211514111095326May2524161220Apr181413121185125Mar242322212017161512111098713Feb121196525JanMerge branch 'master' into 'master'mastermasterdeprecated updateDelete .gitignoreUpdate README.mdUpdate README.mdrepertoire ok for single output; Combined remainrepertoire ok for single output; Combined remaintempo reptempo repmodifying the repertoire.R file to add C reprelease v14.3: Isotype class and subclass columns added in the output all_passed_seq.tsv file.v14.3v14.3release v14.2: Bug fixed in the metadata display in trees. Tree display improved.v14.2v14.2release v14.1: Bug fixed in the metadata display in trees. New metadata set.v14.1v14.1temporelease v14.0: New meta_seq_names parameter in the nextflow.config file, that help to set the name of the column containing the fasta sequence names.v14.0v14.0release v13.0: Immcantation upgraded to 4.5.0: now the constant region allele is providedv13.0v13.0release v12.0: deal with nextflow v24.10.4, test GString in addition of String for pathv12.0v12.0release v11.8: Error messages imporved so that now nextflow does not display all subsequent error messages because of empty file when execution is stopped by an errorv11.8v11.8temporelease v11.7: Bug solved in the translation process: now parallelization works even if empty input filev11.7v11.7release v11.6: Fasta files can have tabs in the headerv11.6v11.6README improvedREADME improvedREADME improvedrelease v11.5: nextflow.config file improved for users, README file updated, Title of donut improved, Zenodo output link updatedv11.5v11.5tempo save. Remain to add new zenodo output linkrelease v11.4: Zenodo input link updatedv11.4v11.4release v11.4: Zenodo input link updatedrelease v11.3: Now a zip folder is accepted as input, explanations in nextflow.config are improvedv11.3v11.3attempt to use data from gitlabrelease v11.2: Donut and Tree plots slightly improvedv11.2v11.2graph improvementrelease v11.1: Option comment_char = '' of read.table() for all .R files with read.table() in binv11.1v11.1release v11.: Option comment_char = '' of read.table() for all .R files with read.table() in binrelease v11.0: Tree plots improvedv11.0v11.0release v11.0: Tree plots improvedrelease v10.4: Donut plot legend correctedv10.4v10.4trap removed in README because the best is to deal it with .profilenextflow.config corrected: now the executor is correctly sethelix update