updating ci-cd to use auto_fast_docs and publish to pipy

.gitlab-ci.yml

+image: python:3.11
+
+stages:
+  - documentation
+  - publish
+  - test
+
+workflow:
+  rules:
+    - if: $CI_COMMIT_BRANCH == "main"
+
+StaticDocPages:
+  stage: documentation
+  script:
+    - python -m pip install --upgrade pip
+    - pip install auto_fast_docs
+    - auto_fast_docs Inflow --username --platform 'gitlab:pasteur.fr' --group haisslab/data-management --layout src
+  artifacts:
+    paths:
+      - $CI_PROJECT_DIR/public
+  rules:
+    - if: $CI_COMMIT_BRANCH == "main"
+
+publish:
+  stage : publish
+  variables:
+    TWINE_PASSWORD: ${PIPY_TOKEN}
+    TWINE_USERNAME: __token__
+  script:
+    - pip install build twine
+    - python -m build
+    - python -m twine upload --repository pipy dist/*
+  rules:
+    - if: $CI_COMMIT_BRANCH == "main"
\ No newline at end of file

pyproject.toml

@@ -28,3 +28,5 @@ optional-dependencies = { celery = { file = [
     "requirements-celery.txt",
 ] } }
 version = { attr = "pypelines.__version__" }
+
+[tool.black]

tests/tests.py

-import unittest, sys, os
+import unittest
 
-sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__), "../..")))
+# for testing on local version, instead of installed version,
+# this may not be desired as testing uninstalled may not catch issues that occur after installation is performed
+# comment the next three lines to test installed version
+# import sys
+# from pathlib import Path
+# sys.path.append(str(Path(__file__).resolve().parent / "src"))
 
 from pypelines import examples
 from pypelines.sessions import Session