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hub-courses
phylogeny-machines
Commits
081787ca
Commit
081787ca
authored
7 years ago
by
Bertrand NÉRON
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install seaview from gensoft instead of compile it
parent
7dd0e80c
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2 changed files
roles/seaview/tasks/main.yml
+2
-36
2 additions, 36 deletions
roles/seaview/tasks/main.yml
roles/setup_user/tasks/main.yml
+2
-1
2 additions, 1 deletion
roles/setup_user/tasks/main.yml
with
4 additions
and
37 deletions
roles/seaview/tasks/main.yml
+
2
−
36
View file @
081787ca
...
@@ -14,41 +14,7 @@
...
@@ -14,41 +14,7 @@
-
gensoft-muscle-3.8.31
-
gensoft-muscle-3.8.31
-
gensoft-gblocks-0.91b
-
gensoft-gblocks-0.91b
-
name
:
create link of phyml for seaview
-
name
:
install seaview
file
:
src
:
"
/local/gensoft2/exe/phyml/3.1/bin/phyml"
dest
:
"
{{
seaview_prefix
}}/bin/PhyML-3.1_linux64"
state
:
link
-
name
:
install seaview dependency
yum
:
yum
:
name
:
"
{{
item
}}"
name
:
gensoft-seaview-4.6.2.1
state
:
latest
state
:
latest
with_items
:
-
fltk-devel
-
name
:
remove old seaview
file
:
path
:
"
{{
seaview_prefix
}}/src/seaview/"
state
:
absent
-
name
:
Create dir source for seaview
file
:
path
:
"
{{
seaview_prefix
}}/src/seaview"
state
:
directory
-
name
:
Download seaview
get_url
:
url
:
"
ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.6.2.1.tar.gz"
dest
:
"
{{
seaview_prefix
}}/src/seaview"
-
name
:
unarchive seaview
unarchive
:
src
:
"
{{
seaview_prefix
}}/src/seaview/seaview_4.6.2.1.tar.gz"
dest
:
"
{{
seaview_prefix
}}/src/seaview/"
creates
:
"
{{
seaview_prefix
}}/src/seaview/seaview_4.6.2.1"
copy
:
no
-
name
:
Compile seaview
command
:
make chdir="{{ seaview_prefix }}/src/seaview_4.6.2.1/seaview"
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roles/setup_user/tasks/main.yml
+
2
−
1
View file @
081787ca
...
@@ -63,3 +63,4 @@
...
@@ -63,3 +63,4 @@
-
paml
-
paml
-
phyml
-
phyml
-
gblocks
-
gblocks
-
seaview
\ No newline at end of file
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