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Unverified Commit 177e90ff authored by Bertrand  NÉRON's avatar Bertrand NÉRON
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fix gensoft_load script

we genrate a scrip in /etc/profile.d to pre load all module

1) the path to module init script has changed
2) the module and the pack name have not always the same name
	 (upper/lower case)
	 so we introduce a new variable module in gensoft_packs
	 'name' is for the package name (.deb)
   whereas 'module' is stand for the module name
parent 36b4fe2f
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---
gensoft_packs:
- {name: beast, vers: 'v2.6.2'}
- {name: beagle, vers: '5.1'}
- {name: bmge, vers: '1.12'}
- {name: clustal-omega, vers: '1.2.4'}
- {name: clustalw, vers: '2.1'}
- {name: fastme, vers: '2.1.6.1'}
- {name: figtree, vers: '1.4.4'}
- {name: goalign, vers: '0.3.5'}
- {name: gotree, vers: '0.4.2'}
- {name: gblocks, vers: '0.91b'}
- {name: iq-tree, vers: '2.0.6'}
- {name: jmodeltest2, vers: '2.1.10'}
- {name: lsd2, vers: '1.9.7'}
- {name: mafft, vers: '7.467'}
- {name: mrbayes, vers: '3.2.7'}
- {name: msaprobs, vers: '1.0.5'}
- {name: paml, vers: '4.9j'}
- {name: phylip, vers: '3.67'}
- {name: phyml, vers: '3.3.20190909'}
- {name: raxml, vers: '8.2.12'}
- {name: raxml-ng, vers: '1.0.1'}
- {name: seaview, vers: '5.0.1'}
- {name: tracer, vers: 'v1.7.1'}
- {name: treetime, vers: '0.7.4'}
- {name: beast, module: beast, vers: 'v2.6.2'}
- {name: beagle, module: beagle, vers: '5.1'}
- {name: bmge, module: BMGE, vers: '1.12'}
- {name: clustal-omega, module: Clustal-omega, vers: '1.2.4'}
- {name: clustalw, module: ClustalW, vers: '2.1'}
- {name: fastme, module: fastme, vers: '2.1.6.1'}
- {name: figtree, module: FigTree, vers: '1.4.4'}
- {name: goalign, module: goalign, vers: '0.3.5'}
- {name: gotree, module: gotree, vers: '0.4.2'}
- {name: gblocks, module: gblocks, vers: '0.91b'}
- {name: iq-tree, module: IQ-TREE, vers: '2.0.6'}
- {name: jmodeltest2, module: jmodeltest2, vers: '2.1.10'}
- {name: lsd2, module: lsd2, vers: '1.9.7'}
- {name: mafft, module: mafft, vers: '7.467'}
- {name: mrbayes, module: mrbayes, vers: '3.2.7'}
- {name: msaprobs, module: msaprobs, vers: '1.0.5'}
- {name: paml, module: paml, vers: '4.9j'}
- {name: phylip, module: phylip, vers: '3.67'}
- {name: phyml, module: phyml, vers: '3.3.20190909'}
- {name: raxml, module: raxml, vers: '8.2.12'}
- {name: raxml-ng, module: raxml-ng, vers: '1.0.1'}
- {name: seaview, module: seaview, vers: '5.0.1'}
- {name: tracer, module: Tracer, vers: 'v1.7.1'}
- {name: treetime, module: treetime, vers: '0.7.4'}
......@@ -4,12 +4,12 @@
if [[ ${EUID} -ne 0 ]]; then
source /local/gensoft2/adm/etc/profile.d/modules.sh
source /opt/gensoft/adm/etc/profile.d/modules.sh
AUTOLOADMODULE=1
export AUTOLOADMODULE
{% for pack in gensoft_packs %}
module load {{ pack.name }}
module load --silent {{ pack.module }}
{% endfor %}
fi
\ No newline at end of file
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