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Commit 28481998 authored by Christophe BECAVIN's avatar Christophe BECAVIN
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Add R script

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src/R/diff_methyl.R
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...@@ -11,11 +11,11 @@ rm(list=ls()) # remove all the objects from the R session ...@@ -11,11 +11,11 @@ rm(list=ls()) # remove all the objects from the R session
general_path <- "/Users/cbecavin/Documents/m6aAkker/" general_path <- "/Users/cbecavin/Documents/m6aAkker/"
#general_path <- "/pasteur/projets/policy01/m6aAkker/" #general_path <- "/pasteur/projets/policy01/m6aAkker/"
project_name <- "CecAm" project_name <- "LivOld"
peak_name <- "CecAm" peak_name <- "LivOld"
project_dir <- paste(general_path,"PeakDiffExpression/",project_name,"/",sep="") project_dir <- paste(general_path,"PeakDiffExpression/",project_name,"/",sep="")
annotation_name <- "gencode.vM13" annotation_name <- "gencode.vM13"
exp_design_name <- "CecAm" exp_design_name <- "LivOld"
exp_design_file = paste(project_dir,"/../../ExpDesign/",exp_design_name,"_exp_design.txt",sep="") exp_design_file = paste(project_dir,"/../../ExpDesign/",exp_design_name,"_exp_design.txt",sep="")
#rscript_folder <- "/pasteur/projets/policy01/m6aAkker/MeRIPSeq/src/R/" #rscript_folder <- "/pasteur/projets/policy01/m6aAkker/MeRIPSeq/src/R/"
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