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Commit 9c6fa2f6 authored by Christophe BECAVIN's avatar Christophe BECAVIN
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Update run.sh

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...@@ -282,7 +282,7 @@ fi ...@@ -282,7 +282,7 @@ fi
echo "############################## DIFFERENTIAL PEAK STEP ######################################" echo "############################## DIFFERENTIAL PEAK STEP ######################################"
# STEP 6 : PeakDetection - Run the different peak detection techniques # STEP 6 : PeakDetection - Run the different peak detection techniques
if $DIFF_PEAK_STEP; then if $DIFF_PEAK_STEP; then
source activate py36 # because some packages R do not work with python 2.7, remove if you had no problem) source activate py36 # because some packages R do not work with python 2.7, remove if you have no problem)
echo "Run peak differential expression analysis for" $project_name echo "Run peak differential expression analysis for" $project_name
folder_diff=$folder/PeakDiffExpression/ folder_diff=$folder/PeakDiffExpression/
Rscript src/R/diff_methyl.R ${folder_diff} $project_name $annotation_file Rscript src/R/diff_methyl.R ${folder_diff} $project_name $annotation_file
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