Bash slurm

src/bash_slurm/RunPeakDetection.sh

 #!/bin/bash
 #SBATCH --job-name PDetect
-#SBATCH --array=1-2
 #SBATCH --output temp/PDetect.out
 #SBATCH --error temp/PDetect.err
 #SBATCH --mail-type FAIL

src/bash_slurm/RunSeqDepth.sh

 #!/bin/bash
 #SBATCH --job-name SeqDep
-#SBATCH --array=1-2
 #SBATCH --output temp/SeqDep.out
 #SBATCH --error temp/SeqDep.err
-#SBATCH --qos=fast
+#SBATCH --qos=hubbioit
 #SBATCH --mail-type FAIL
 #SBATCH --cpus-per-task 1
 #SBATCH --mem=5GB
-#SBATCH -p common
+#SBATCH -p hubbioit
 
 folder=/pasteur/projets/policy01/m6aAkker
 scratch=/pasteur/scratch/cbecavin/m6aAkker/
@@ -15,8 +14,11 @@ scriptFolder=/pasteur/projets/policy01/m6aAkker/MeRIPSeq/
 line=$(head -n ${SLURM_ARRAY_TASK_ID} $1 | tail -n 1)
 dataName=$(echo "$line" | awk '{print $2}')
 rawData=$(echo "$line" | awk '{print $1}')
+
 # prepare variables
-mkdir $folder/temp/${SLURM_JOB_NAME}
+if [ ! -d $folder/temp/${SLURM_JOB_NAME} ]; then
+	mkdir $folder/temp/${SLURM_JOB_NAME}
+fi
 shFile=$folder/temp/${SLURM_JOB_NAME}/${dataName}_${SLURM_JOB_NAME}_${SLURM_JOB_ID}.sh
 logFile=$folder/temp/${SLURM_JOB_NAME}/${dataName}_${SLURM_JOB_NAME}_${SLURM_JOB_ID}.log