src/bash/mapping.sh

src/bash/seqdepth.sh

src/bash/windows_cov.sh

src/python copy/create_rRNA_genome.py

src/python copy/create_windows.py

src/python copy/htseq_transcript.py

src/python copy/htseq_window.py

src/python copy/parse_annotation.py

src/python copy/peak_annotation.py

src/python copy/peak_calling_fisher.py

src/python copy/peak_calling_poi.py

src/python copy/peak_calling_rpmf.py

src/python copy/peak_finalize.py

src/python copy/reference_peak.py

src/python copy/sequence_python.py

src/python copy/sequence_python.pyc

src/python/peak_annotation.py

src/python/peak_finalize.py

src/python/reference_peak.py