Newer
Older
```
GSM2629955 SRR5572646 ChIP-seq_H3K27ac_D4_shCtrl_rep1
GSM2629956 SRR5572647 ChIP-seq_H3K27ac_D4_shCtrl_rep2
GSM2629961 SRR5572652 ChIP-seq_INPUT_D4_shCtrl_rep1
GSM2629962 SRR5572653 ChIP-seq_INPUT_D4_shCtrl_rep2
GSM2629967 SRR5572658 ChIP-seq_H3K27ac_D4_shUbc9_rep1
GSM2629968 SRR5572659 ChIP-seq_H3K27ac_D4_shUbc9_rep2
GSM2629973 SRR5572664 ChIP-seq_INPUT_D4_shUbc9_rep1
GSM2629974 SRR5572665 ChIP-seq_INPUT_D4_shUbc9_rep2
GSM2629977 SRR5572668 ChIP-seq_Klf4_D4_shCtrl_rep1
GSM2629978 SRR5572669 ChIP-seq_Klf4_D4_shCtrl_rep2
GSM2629985 SRR5572676 ChIP-seq_Klf4_D4_shUbc9_rep1
GSM2629986 SRR5572677 ChIP-seq_Klf4_D4_shUbc9_rep2
```
```
GSM2629991 SRR5572682 ATAC-seq_D4_shCtrl_rep1
GSM2629992 SRR5572684 ATAC-seq_D4_shCtrl_rep2
GSM2629993 SRR5572686 ATAC-seq_D4_shCtrl_rep3
GSM2629994 SRR5572688 ATAC-seq_D4_shUbc9_rep1
GSM2629995 SRR5572690 ATAC-seq_D4_shUbc9_rep2
GSM2629996 SRR5572692 ATAC-seq_D4_shUbc9_rep3
```
| Course | training |
|-----------|--------------------|
| ChIPseq: QC metrics | [Hands-on](Monday/ePeak_QC_metrics.md) |
| ChIPseq: Peak calling | [Hands-on](Tuesday/ePeak_PeakCalling.md) |
| Visualization: IGV | [Hands-on](Tuesday/IGV.md) |
| Visualization: Deeptools | [Hands-on](Tuesday/Deeptools.md) |
| ATACseq: analysis | [Hands-on](Wednesday/ATACflow.md) |
| ChIPseq: Differential binding | [Hands-on](Thursday/chipflowR.md) |
| ChIPseq: Peak annotation | [Hands-on](Thursday/peak_annotation.Rmd ) |
| ChIPseq: Motif finding | [Hands-on](Thursday/MEME.md) |
## Friday session : questions
Feel free to add your questions here :
https://docs.google.com/document/d/1MjZz2wyQqiZbSD386N6xOYZvPDgibRvBerXzbgKRJp8/edit?usp=sharing
- Natalia Pietrosemoli: <natalia.pietrosemoli@pasteur.fr>
- Claudia Chica: <claudia.chica@pasteur.fr>