Update Wednesday/MFA/data/ENCODE_metadata_bigWig_foldChangeOverControl.released.txt, Wednesday/MFA/data/ENCODE_mergedPeaks_H3K4me2.ov, Wednesday/MFA/EPITOME_CS_integration.Rmd, Wednesday/MFA/EPITOME_CS_integration.html

Update Wednesday/MFA/RData/AnnotationRows.RData, Wednesday/MFA/RData/DEGs.RData, Wednesday/MFA/RData/DMpeaks_H3K4me2.RData, Wednesday/MFA/RData/H3K4me2_allPeaks_CS.RData, Wednesday/MFA/RData/mfa.EPITOME.RData, Wednesday/MFA/RData/TOME_RMAandNoBatch.RData, Wednesday/MFA/RData/countNormLength_H3K4me2.RData, Wednesday/MFA/RData/DM_results_H3K4me2.RData, Wednesday/MFA/RData/DE_results_Annot.RData
Deleted Wednesday/MAF/EPITOME_CS_integration.Rmd

Update Tuesday/GSEA_camera/data/differential_genes_human.RData, Tuesday/GSEA_camera/data/differential_genes_myc.RData, Tuesday/GSEA_camera/data/LFC_genes_human.RData, Tuesday/practicals_day2_PHINDAccess.Rmd

Update Monday/data/counts_myc.csv, Monday/data/counts_human.txt, Monday/data/annotation/PATRIC_genome_feature_myc.txt, Monday/output/annotatedFilteredCounts_myc.txt, Monday/output/GOterms_myc.txt, Monday/output/list_go_myc.RData, Monday/output/Kegg.GeneIDs.RData, Monday/output/annotatedCounts_Human_solution1.txt, Monday/output/KeggPathways_human.txt
Deleted Monday/data/PATRIC_genome_feature.txt, Monday/data/counts_raw_Myc.csv

Update Monday/data/Mycobacterium/tablecounts_raw.csv, Monday/data/Mycobacterium/PATRIC_genome_feature.txt