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Merge branch 'dev' into 'master'
Merge new features to master branch See merge request hub/chipflow!5
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- COPYRIGHT 3 additions, 12 deletionsCOPYRIGHT
- README.md 80 additions, 39 deletionsREADME.md
- Snakefile 415 additions, 204 deletionsSnakefile
- config/cluster_config.json 6 additions, 1 deletionconfig/cluster_config.json
- config/config.yaml 96 additions, 21 deletionsconfig/config.yaml
- config/design.txt 3 additions, 1 deletionconfig/design.txt
- config/multiqc_config.yaml 140 additions, 84 deletionsconfig/multiqc_config.yaml
- images/chipflow_pipeline.svg 0 additions, 1 deletionimages/chipflow_pipeline.svg
- images/epeak_workflow.svg 1726 additions, 0 deletionsimages/epeak_workflow.svg
- images/igv_snapshot.png 0 additions, 0 deletionsimages/igv_snapshot.png
- images/multiqc_header.png 0 additions, 0 deletionsimages/multiqc_header.png
- images/rulegraph_all.svg 589 additions, 0 deletionsimages/rulegraph_all.svg
- images/rulegraph_macs_idr.svg 499 additions, 0 deletionsimages/rulegraph_macs_idr.svg
- images/rulegraph_seacr_IA.svg 1315 additions, 0 deletionsimages/rulegraph_seacr_IA.svg
- singularity/epeak.def 0 additions, 0 deletionssingularity/epeak.def
- test/config.yaml 103 additions, 31 deletionstest/config.yaml
- test/design.txt 6 additions, 2 deletionstest/design.txt
- test/get_GEO_data.sh 7 additions, 4 deletionstest/get_GEO_data.sh
- workflow/rules/EstimateLibraryComplexity.rules 16 additions, 29 deletionsworkflow/rules/EstimateLibraryComplexity.rules
- workflow/rules/bamCoverage.rules 17 additions, 8 deletionsworkflow/rules/bamCoverage.rules
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